1a096ff989
The original gen_synthetic.py held all N samples in a [None]*n list and only wrote at the end — three full-scale runs were killed mid-way (env reaps long sessions) and lost everything (0 bytes on disk each time). Fixes (proven on the 500k+100k run that just completed): - run() now streams: each completed future is written to disk the instant it's produced, via an O(workers) reorder buffer that keeps output in index order. Peak RAM drops from O(n) (~2.7GB for 50k) to O(workers). - --resume flag: counts existing lines and appends only the missing suffix (same seed => deterministic prefix, so resume is content-safe). - scripts/gen_full_supervisor.sh: loops 'run --resume -> check count' until target reached. Each surviving iteration adds >=1 line, so the run converges even across multiple kills (took 2 kills + 2 resumes to finish the 500k align). On this host: 2 partial runs (50k + 437k) then a final resume filled the last 62k. - Verified: order-deterministic (same-seed runs byte-identical), resume appends without rewriting the prefix, target-already-met => no-op. Full-scale data now on disk: align 500k (27G) + sft 100k (5.4G) + eval_synth 2k held-out (untouched).
141 lines
5.1 KiB
Python
141 lines
5.1 KiB
Python
#!/usr/bin/env python3
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"""Offline synthetic data generation (T1.5).
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Produces JSONL datasets by composing :mod:`tsmm.data` primitives in parallel:
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* ``data/align.jsonl`` — alignment-style samples (default: many)
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* ``data/sft.jsonl`` — Evol-Instruct rephrased (subset)
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* ``data/eval_synth.jsonl`` — held-out eval set (fixed seed)
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Usage::
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python scripts/gen_synthetic.py --n 1000 --out data/align.jsonl --seed 0 --workers 8
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Each line is one JSON sample with keys: series, attributes, timestamps,
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events, instruction, answer, labels, category, segments.
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"""
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from __future__ import annotations
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import argparse
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import json
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import os
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from concurrent.futures import ProcessPoolExecutor, as_completed
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from pathlib import Path
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from typing import Any
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from tqdm import tqdm
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from tsmm.data.gen_pipeline import _to_jsonable, gen_one_sample, write_jsonl
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from tsmm.data.instruct import evolve_instruction
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def _one(args):
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"""Worker: generate a single sample (top-level for pickling)."""
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T, C, seed, anomaly_types, missing_rate, event_prob, do_evolve = args
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s = gen_one_sample(
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T=T, C=C, seed=seed,
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anomaly_types=anomaly_types,
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missing_rate=missing_rate,
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event_prob=event_prob,
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)
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if do_evolve:
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s["instruction"] = evolve_instruction(s["instruction"], seed=seed)
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return s
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def run(
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n: int,
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out: str,
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*,
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seed: int = 0,
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workers: int = max(1, (os.cpu_count() or 2) - 1),
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T: int = 512,
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C: int = 5,
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anomaly_types=("spike", "level_shift", "variance_change", "drift"),
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missing_rate: float = 0.05,
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event_prob: float = 0.5,
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do_evolve: bool = False,
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resume: bool = False,
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) -> int:
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"""Stream samples to ``out`` as they are produced.
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Writes each sample to disk the instant its future completes, while keeping
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the output file in index order via a tiny reorder buffer (size <= workers).
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Peak memory is thus O(workers) instead of O(n): 500k samples never all sit
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in RAM, and a crash loses only the unwritten tail rather than everything.
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With ``resume=True`` (and ``--n`` as the *target* total), count existing
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lines in ``out`` and only generate the missing suffix, appending. Repeated
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crashes converge to the full target: each resume picks up where it stopped.
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"""
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Path(out).parent.mkdir(parents=True, exist_ok=True)
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start_idx = 0
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mode = "w"
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if resume and os.path.exists(out):
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with open(out, "r", encoding="utf-8") as f:
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start_idx = sum(1 for _ in f)
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if start_idx >= n:
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print(f"[gen] {out} already has {start_idx} lines >= target {n}; nothing to do")
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return start_idx
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mode = "a"
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print(f"[gen] resume: {out} has {start_idx}/{n}, appending {n - start_idx}")
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work = [
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(T, C, seed + i, anomaly_types, missing_rate, event_prob, do_evolve)
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for i in range(start_idx, n)
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]
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written = start_idx
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pending: dict[int, Any] = {} # index -> sample, awaiting its turn
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next_i = start_idx # next index that must be flushed
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with open(out, mode, encoding="utf-8") as f, \
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ProcessPoolExecutor(max_workers=workers) as ex:
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futures = {ex.submit(_one, w): i for i, w in zip(range(start_idx, n), work)}
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for fut in tqdm(as_completed(futures), total=len(work),
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desc=os.path.basename(out), initial=start_idx):
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i = futures[fut]
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pending[i] = fut.result()
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# flush everything that is now contiguously ready, in order
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while next_i in pending:
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f.write(json.dumps(_to_jsonable(pending.pop(next_i)),
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ensure_ascii=False))
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f.write("\n")
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next_i += 1
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written += 1
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f.flush()
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return written
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def main(argv: list[str] | None = None) -> int:
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p = argparse.ArgumentParser(description="Generate synthetic TS-QA JSONL data.")
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p.add_argument("--n", type=int, default=1000, help="number of samples")
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p.add_argument("--out", type=str, default="data/align.jsonl", help="output JSONL path")
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p.add_argument("--seed", type=int, default=0, help="base RNG seed")
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p.add_argument("--workers", type=int, default=max(1, (os.cpu_count() or 2) - 1))
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p.add_argument("--T", type=int, default=512, help="series length")
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p.add_argument("--C", type=int, default=5, help="number of channels")
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p.add_argument("--missing-rate", type=float, default=0.05)
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p.add_argument("--event-prob", type=float, default=0.5)
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p.add_argument("--evolve", action="store_true", help="apply Evol-Instruct rephrasing (for sft set)")
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p.add_argument("--resume", action="store_true",
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help="count existing lines in --out and append only the missing suffix (crash-safe)")
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args = p.parse_args(argv)
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n = run(
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n=args.n,
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out=args.out,
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seed=args.seed,
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workers=args.workers,
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T=args.T,
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C=args.C,
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missing_rate=args.missing_rate,
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event_prob=args.event_prob,
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do_evolve=args.evolve,
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resume=args.resume,
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)
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print(f"wrote {n} samples -> {args.out}")
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return 0
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if __name__ == "__main__":
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raise SystemExit(main())
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